IL_9NL6_086

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGUGUAGG*CCUUGAAAUACCACCCUU

Length

27 nucleotides

Bulged bases

9NL6|1|R1|U|2172, 9NL6|1|R1|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R1|A|2108
9NL6|1|R1|U|2109
9NL6|1|R1|G|2110
9NL6|1|R1|U|2111
9NL6|1|R1|G|2112
9NL6|1|R1|U|2113
9NL6|1|R1|A|2114
9NL6|1|R1|G|2115
9NL6|1|R1|G|2116
*
9NL6|1|R1|C|2164
9NL6|1|R1|C|2165
9NL6|1|R1|U|2166
9NL6|1|R1|U|2167
9NL6|1|R1|G|2168
9NL6|1|R1|A|2169
9NL6|1|R1|A|2170
9NL6|1|R1|A|2171
9NL6|1|R1|U|2172
9NL6|1|R1|A|2173
9NL6|1|R1|C|2174
9NL6|1|R1|C|2175
9NL6|1|R1|A|2176
9NL6|1|R1|C|2177
9NL6|1|R1|C|2178
9NL6|1|R1|C|2179
9NL6|1|R1|U|2180
9NL6|1|R1|U|2181

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT