IL_9NL6_087

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAGGUGGGAG*CGAC

Length

16 nucleotides

Bulged bases

9NL6|1|R1|A|2117, 9NL6|1|R1|U|2118, 9NL6|1|R1|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R1|G|2116
9NL6|1|R1|A|2117
9NL6|1|R1|U|2118
9NL6|1|R1|A|2119
9NL6|1|R1|G|2120
9NL6|1|R1|G|2121
9NL6|1|R1|U|2122
9NL6|1|R1|G|2123
9NL6|1|R1|G|2124
9NL6|1|R1|G|2125
9NL6|1|R1|A|2126
9NL6|1|R1|G|2127
*
9NL6|1|R1|C|2161
9NL6|1|R1|G|2162
9NL6|1|R1|A|2163
9NL6|1|R1|C|2164

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT