IL_9NL6_113

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

9NL6|1|R2|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_113 not in the Motif Atlas

Homologous match to IL_5J7L_355

Geometric discrepancy: 0.2392

The information below is about IL_5J7L_355

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9NL6|1|R2|C|17
9NL6|1|R2|G|18
*
9NL6|1|R2|U|65
9NL6|1|R2|A|66
9NL6|1|R2|G|67

Current chains

Chain R2

5S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA