IL_9NL7_040

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

9NL7|1|R1|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL7|1|R1|C|1043
9NL7|1|R1|C|1044
9NL7|1|R1|C|1045
9NL7|1|R1|A|1046
9NL7|1|R1|G|1047
9NL7|1|R1|A|1048
9NL7|1|R1|C|1049
9NL7|1|R1|A|1050
9NL7|1|R1|G|1051
9NL7|1|R1|C|1052
9NL7|1|R1|C|1053
*
9NL7|1|R1|G|1106
9NL7|1|R1|G|1107
9NL7|1|R1|U|1108
9NL7|1|R1|C|1109
9NL7|1|R1|G|1110
9NL7|1|R1|A|1111
9NL7|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6