IL_9NL7_085

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGUAGG*CCUUGAAAUACCACCC

Length

23 nucleotides

Bulged bases

9NL7|1|R1|U|2111, 9NL7|1|R1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL7|1|R1|G|2110
9NL7|1|R1|U|2111
9NL7|1|R1|G|2112
9NL7|1|R1|U|2113
9NL7|1|R1|A|2114
9NL7|1|R1|G|2115
9NL7|1|R1|G|2116
*
9NL7|1|R1|C|2164
9NL7|1|R1|C|2165
9NL7|1|R1|U|2166
9NL7|1|R1|U|2167
9NL7|1|R1|G|2168
9NL7|1|R1|A|2169
9NL7|1|R1|A|2170
9NL7|1|R1|A|2171
9NL7|1|R1|U|2172
9NL7|1|R1|A|2173
9NL7|1|R1|C|2174
9NL7|1|R1|C|2175
9NL7|1|R1|A|2176
9NL7|1|R1|C|2177
9NL7|1|R1|C|2178
9NL7|1|R1|C|2179

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT