IL_9NL7_087

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUAGGUGGGAG*CGAC

Length

16 nucleotides

Bulged bases

9NL7|1|R1|A|2117, 9NL7|1|R1|U|2118, 9NL7|1|R1|A|2119, 9NL7|1|R1|A|2163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL7|1|R1|G|2116
9NL7|1|R1|A|2117
9NL7|1|R1|U|2118
9NL7|1|R1|A|2119
9NL7|1|R1|G|2120
9NL7|1|R1|G|2121
9NL7|1|R1|U|2122
9NL7|1|R1|G|2123
9NL7|1|R1|G|2124
9NL7|1|R1|G|2125
9NL7|1|R1|A|2126
9NL7|1|R1|G|2127
*
9NL7|1|R1|C|2161
9NL7|1|R1|G|2162
9NL7|1|R1|A|2163
9NL7|1|R1|C|2164

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT