IL_9NLB_068

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

9NLB|1|R1|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLB_068 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.1237

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9NLB|1|R1|G|1770
9NLB|1|R1|C|1771
*
9NLB|1|R1|G|1980
9NLB|1|R1|A|1981
9NLB|1|R1|U|1982

Current chains

Chain R1

23S ribosomal RNA

Nearby chains