IL_9NLB_086

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAGG*CGACCUUGAAAUACC

Length

21 nucleotides

Bulged bases

9NLB|1|R1|U|2166, 9NLB|1|R1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLB|1|R1|G|2123
9NLB|1|R1|G|2124
9NLB|1|R1|G|2125
9NLB|1|R1|A|2126
9NLB|1|R1|G|2127
9NLB|1|R1|G|2128
*
9NLB|1|R1|C|2161
9NLB|1|R1|G|2162
9NLB|1|R1|A|2163
9NLB|1|R1|C|2164
9NLB|1|R1|C|2165
9NLB|1|R1|U|2166
9NLB|1|R1|U|2167
9NLB|1|R1|G|2168
9NLB|1|R1|A|2169
9NLB|1|R1|A|2170
9NLB|1|R1|A|2171
9NLB|1|R1|U|2172
9NLB|1|R1|A|2173
9NLB|1|R1|C|2174
9NLB|1|R1|C|2175

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain E

Energy-dependent translational throttle protein EttA