IL_9NLB_102

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLB_102 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.3028

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9NLB|1|R1|C|2651
9NLB|1|R1|C|2652
9NLB|1|R1|U|2653
9NLB|1|R1|A|2654
9NLB|1|R1|G|2655
9NLB|1|R1|U|2656
9NLB|1|R1|A|2657
9NLB|1|R1|C|2658
*
9NLB|1|R1|G|2663
9NLB|1|R1|G|2664
9NLB|1|R1|A|2665
9NLB|1|R1|C|2666
9NLB|1|R1|C|2667
9NLB|1|R1|G|2668
9NLB|1|R1|G|2669

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 6

Large ribosomal subunit protein uL6