IL_9NLB_139
3D structure
- PDB id
- 9NLB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLB_139 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.0974
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
9NLB|1|R3|C|580
9NLB|1|R3|G|581
9NLB|1|R3|C|582
9NLB|1|R3|A|583
9NLB|1|R3|G|584
*
9NLB|1|R3|U|757
9NLB|1|R3|C|758
9NLB|1|R3|A|759
9NLB|1|R3|G|760
9NLB|1|R3|G|761
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sh
- 30S ribosomal protein S8
- Chain sl
- Small ribosomal subunit protein uS12
- Chain so
- Small ribosomal subunit protein uS15
- Chain sq
- Small ribosomal subunit protein uS17
Coloring options: