3D structure

PDB id
9NLE (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGC*GCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLE_001 not in the Motif Atlas
Geometric match to IL_4WF9_121
Geometric discrepancy: 0.2045
The information below is about IL_4WF9_121
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10892.1
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
39

Unit IDs

9NLE|1|R1|A|6
9NLE|1|R1|G|7
9NLE|1|R1|C|8
*
9NLE|1|R1|G|2895
9NLE|1|R1|C|2896
9NLE|1|R1|U|2897

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13

Coloring options:


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