IL_9NLE_066

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_066 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0811

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9NLE|1|R1|G|1666
9NLE|1|R1|G|1667
9NLE|1|R1|A|1668
9NLE|1|R1|A|1669
9NLE|1|R1|C|1670
9NLE|1|R1|U|1671
9NLE|1|R1|A|1672
9NLE|1|R1|G|1673
9NLE|1|R1|G|1674
*
9NLE|1|R1|C|1990
9NLE|1|R1|U|1991
9NLE|1|R1|G|1992
9NLE|1|R1|U|1993
9NLE|1|R1|C|1994

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3