IL_9NLE_079

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9NLE|1|R1|A|1938, 9NLE|1|R1|U|1944, 9NLE|1|R1|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_079 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1234

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9NLE|1|R1|C|1934
9NLE|1|R1|G|1935
9NLE|1|R1|A|1936
9NLE|1|R1|A|1937
9NLE|1|R1|A|1938
9NLE|1|R1|U|1939
9NLE|1|R1|U|1940
9NLE|1|R1|C|1941
9NLE|1|R1|C|1942
9NLE|1|R1|U|1943
9NLE|1|R1|U|1944
9NLE|1|R1|G|1945
*
9NLE|1|R1|C|1961
9NLE|1|R1|C|1962
9NLE|1|R1|U|1963
9NLE|1|R1|G|1964

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA