IL_9NLE_088

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

9NLE|1|R1|A|2126, 9NLE|1|R1|U|2166, 9NLE|1|R1|U|2172, 9NLE|1|R1|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLE|1|R1|G|2123
9NLE|1|R1|G|2124
9NLE|1|R1|G|2125
9NLE|1|R1|A|2126
9NLE|1|R1|G|2127
*
9NLE|1|R1|C|2161
9NLE|1|R1|G|2162
9NLE|1|R1|A|2163
9NLE|1|R1|C|2164
9NLE|1|R1|C|2165
9NLE|1|R1|U|2166
9NLE|1|R1|U|2167
9NLE|1|R1|G|2168
9NLE|1|R1|A|2169
9NLE|1|R1|A|2170
9NLE|1|R1|A|2171
9NLE|1|R1|U|2172
9NLE|1|R1|A|2173
9NLE|1|R1|C|2174
9NLE|1|R1|C|2175

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain E

Energy-dependent translational throttle protein EttA