IL_9NLE_104

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_104 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.308

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9NLE|1|R1|C|2651
9NLE|1|R1|C|2652
9NLE|1|R1|U|2653
9NLE|1|R1|A|2654
9NLE|1|R1|G|2655
9NLE|1|R1|U|2656
9NLE|1|R1|A|2657
9NLE|1|R1|C|2658
*
9NLE|1|R1|G|2663
9NLE|1|R1|G|2664
9NLE|1|R1|A|2665
9NLE|1|R1|C|2666
9NLE|1|R1|C|2667
9NLE|1|R1|G|2668
9NLE|1|R1|G|2669

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 6

Large ribosomal subunit protein uL6