IL_9NLE_109

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

9NLE|1|R1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_109 not in the Motif Atlas

Geometric match to IL_9DFE_058

Geometric discrepancy: 0.3334

The information below is about IL_9DFE_058

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9NLE|1|R1|C|2795
9NLE|1|R1|U|2796
*
9NLE|1|R1|A|2799
9NLE|1|R1|A|2800
9NLE|1|R1|G|2801

Current chains

Chain R1

23S ribosomal RNA

Nearby chains