IL_9NLE_173

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLE_173 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0872

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NLE|1|R3|G|1401
9NLE|1|R3|C|1402
9NLE|1|R3|C|1403
9NLE|1|R3|C|1404
*
9NLE|1|R3|G|1497
9NLE|1|R3|U|1498
9NLE|1|R3|A|1499
9NLE|1|R3|A|1500
9NLE|1|R3|C|1501

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain T

Transfer RNA; tRNA