IL_9NLF_009

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2456

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9NLF|1|R1|C|274
9NLF|1|R1|C|275
9NLF|1|R1|U|276
9NLF|1|R1|G|277
9NLF|1|R1|A|278
9NLF|1|R1|A|279
9NLF|1|R1|U|280
9NLF|1|R1|C|281
*
9NLF|1|R1|G|359
9NLF|1|R1|U|360
9NLF|1|R1|G|361
9NLF|1|R1|A|362
9NLF|1|R1|G|363

Current chains

Chain R1

23S ribosomal RNA

Nearby chains