IL_9NLF_023

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9NLF|1|R1|U|846, 9NLF|1|R1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_023 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3783

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9NLF|1|R1|A|844
9NLF|1|R1|A|845
9NLF|1|R1|U|846
9NLF|1|R1|U|847
9NLF|1|R1|C|848
*
9NLF|1|R1|G|930
9NLF|1|R1|U|931
9NLF|1|R1|U|932
9NLF|1|R1|A|933
9NLF|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30