IL_9NLF_063

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_063 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0873

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9NLF|1|R1|G|1666
9NLF|1|R1|G|1667
9NLF|1|R1|A|1668
9NLF|1|R1|A|1669
9NLF|1|R1|C|1670
9NLF|1|R1|U|1671
9NLF|1|R1|A|1672
9NLF|1|R1|G|1673
9NLF|1|R1|G|1674
*
9NLF|1|R1|C|1990
9NLF|1|R1|U|1991
9NLF|1|R1|G|1992
9NLF|1|R1|U|1993
9NLF|1|R1|C|1994

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3