IL_9NLF_077

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9NLF|1|R1|A|1938, 9NLF|1|R1|U|1944, 9NLF|1|R1|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_077 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1231

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

9NLF|1|R1|C|1934
9NLF|1|R1|G|1935
9NLF|1|R1|A|1936
9NLF|1|R1|A|1937
9NLF|1|R1|A|1938
9NLF|1|R1|U|1939
9NLF|1|R1|U|1940
9NLF|1|R1|C|1941
9NLF|1|R1|C|1942
9NLF|1|R1|U|1943
9NLF|1|R1|U|1944
9NLF|1|R1|G|1945
*
9NLF|1|R1|C|1961
9NLF|1|R1|C|1962
9NLF|1|R1|U|1963
9NLF|1|R1|G|1964

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA