IL_9NLF_081

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

9NLF|1|R1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_081 not in the Motif Atlas

Homologous match to IL_9DFE_081

Geometric discrepancy: 0.1056

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9NLF|1|R1|A|2070
9NLF|1|R1|A|2071
*
9NLF|1|R1|U|2438
9NLF|1|R1|A|2439
9NLF|1|R1|C|2440
9NLF|1|R1|U|2441

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain T

Transfer RNA; tRNA

Chain Y

Probable ATP-binding protein YbiT