IL_9NLF_085

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGUGUAGGAUAGGUGG*CACCCUU

Length

24 nucleotides

Bulged bases

9NLF|1|R1|G|2112, 9NLF|1|R1|U|2113, 9NLF|1|R1|G|2116, 9NLF|1|R1|A|2117, 9NLF|1|R1|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R1|A|2108
9NLF|1|R1|U|2109
9NLF|1|R1|G|2110
9NLF|1|R1|U|2111
9NLF|1|R1|G|2112
9NLF|1|R1|U|2113
9NLF|1|R1|A|2114
9NLF|1|R1|G|2115
9NLF|1|R1|G|2116
9NLF|1|R1|A|2117
9NLF|1|R1|U|2118
9NLF|1|R1|A|2119
9NLF|1|R1|G|2120
9NLF|1|R1|G|2121
9NLF|1|R1|U|2122
9NLF|1|R1|G|2123
9NLF|1|R1|G|2124
*
9NLF|1|R1|C|2175
9NLF|1|R1|A|2176
9NLF|1|R1|C|2177
9NLF|1|R1|C|2178
9NLF|1|R1|C|2179
9NLF|1|R1|U|2180
9NLF|1|R1|U|2181

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT