IL_9NLF_087

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCUUUGAAGUGU*GCAUGGAGCC

Length

23 nucleotides

Bulged bases

9NLF|1|R1|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R1|G|2127
9NLF|1|R1|G|2128
9NLF|1|R1|C|2129
9NLF|1|R1|U|2130
9NLF|1|R1|U|2131
9NLF|1|R1|U|2132
9NLF|1|R1|G|2133
9NLF|1|R1|A|2134
9NLF|1|R1|A|2135
9NLF|1|R1|G|2136
9NLF|1|R1|U|2137
9NLF|1|R1|G|2138
9NLF|1|R1|U|2139
*
9NLF|1|R1|G|2152
9NLF|1|R1|C|2153
9NLF|1|R1|A|2154
9NLF|1|R1|U|2155
9NLF|1|R1|G|2156
9NLF|1|R1|G|2157
9NLF|1|R1|A|2158
9NLF|1|R1|G|2159
9NLF|1|R1|C|2160
9NLF|1|R1|C|2161

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1