IL_9NLF_153

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9NLF|1|R3|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLF_153 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.0757

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9NLF|1|R3|G|922
9NLF|1|R3|A|923
*
9NLF|1|R3|U|1393
9NLF|1|R3|A|1394
9NLF|1|R3|C|1395

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain se

Small ribosomal subunit protein uS5