IL_9NLH_006

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_006 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.076

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NLH|1|R1|G|188
9NLH|1|R1|G|189
9NLH|1|R1|A|190
9NLH|1|R1|A|191
9NLH|1|R1|C|192
9NLH|1|R1|U|193
9NLH|1|R1|G|194
*
9NLH|1|R1|C|201
9NLH|1|R1|U|202
9NLH|1|R1|A|203
9NLH|1|R1|A|204
9NLH|1|R1|G|205
9NLH|1|R1|U|206
9NLH|1|R1|A|207
9NLH|1|R1|C|208

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 28

50S ribosomal protein L28

Chain 35

Large ribosomal subunit protein bL35