IL_9NLH_009

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2461

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9NLH|1|R1|C|274
9NLH|1|R1|C|275
9NLH|1|R1|U|276
9NLH|1|R1|G|277
9NLH|1|R1|A|278
9NLH|1|R1|A|279
9NLH|1|R1|U|280
9NLH|1|R1|C|281
*
9NLH|1|R1|G|359
9NLH|1|R1|U|360
9NLH|1|R1|G|361
9NLH|1|R1|A|362
9NLH|1|R1|G|363

Current chains

Chain R1

23S ribosomal RNA

Nearby chains