3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLH_019 not in the Motif Atlas
Homologous match to IL_4WF9_024
Geometric discrepancy: 0.1094
The information below is about IL_4WF9_024
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

9NLH|1|R1|U|703
9NLH|1|R1|G|704
9NLH|1|R1|A|705
9NLH|1|R1|A|706
9NLH|1|R1|G|707
*
9NLH|1|R1|U|724
9NLH|1|R1|G|725
9NLH|1|R1|G|726
9NLH|1|R1|A|727
9NLH|1|R1|G|728

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2

Coloring options:


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