IL_9NLH_023

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9NLH|1|R1|U|846, 9NLH|1|R1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLH_023 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3331

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9NLH|1|R1|A|844
9NLH|1|R1|A|845
9NLH|1|R1|U|846
9NLH|1|R1|U|847
9NLH|1|R1|C|848
*
9NLH|1|R1|G|930
9NLH|1|R1|U|931
9NLH|1|R1|U|932
9NLH|1|R1|A|933
9NLH|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30