IL_9NLH_041

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCACUG

Length

44 nucleotides

Bulged bases

9NLH|1|R1|U|1061, 9NLH|1|R1|U|1065, 9NLH|1|R1|U|1066, 9NLH|1|R1|A|1070, 9NLH|1|R1|C|1072, 9NLH|1|R1|U|1081, 9NLH|1|R1|U|1082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLH|1|R1|C|1053
9NLH|1|R1|A|1054
9NLH|1|R1|G|1055
9NLH|1|R1|G|1056
9NLH|1|R1|A|1057
9NLH|1|R1|U|1058
9NLH|1|R1|G|1059
9NLH|1|R1|U|1060
9NLH|1|R1|U|1061
9NLH|1|R1|G|1062
9NLH|1|R1|G|1063
9NLH|1|R1|C|1064
9NLH|1|R1|U|1065
9NLH|1|R1|U|1066
9NLH|1|R1|A|1067
9NLH|1|R1|G|1068
9NLH|1|R1|A|1069
9NLH|1|R1|A|1070
9NLH|1|R1|G|1071
9NLH|1|R1|C|1072
9NLH|1|R1|A|1073
9NLH|1|R1|G|1074
9NLH|1|R1|C|1075
9NLH|1|R1|C|1076
9NLH|1|R1|A|1077
9NLH|1|R1|U|1078
9NLH|1|R1|C|1079
9NLH|1|R1|A|1080
9NLH|1|R1|U|1081
9NLH|1|R1|U|1082
9NLH|1|R1|U|1083
9NLH|1|R1|A|1084
9NLH|1|R1|A|1085
9NLH|1|R1|A|1086
9NLH|1|R1|G|1087
9NLH|1|R1|A|1088
9NLH|1|R1|A|1089
9NLH|1|R1|A|1090
*
9NLH|1|R1|U|1101
9NLH|1|R1|C|1102
9NLH|1|R1|A|1103
9NLH|1|R1|C|1104
9NLH|1|R1|U|1105
9NLH|1|R1|G|1106

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 36

50S ribosomal protein L36