IL_9NLH_159

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

9NLH|1|R3|U|1025, 9NLH|1|R3|G|1026, 9NLH|1|R3|C|1027, 9NLH|1|R3|C|1028, 9NLH|1|R3|U|1029, 9NLH|1|R3|C|1031, 9NLH|1|R3|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLH|1|R3|G|1003
9NLH|1|R3|A|1004
9NLH|1|R3|A|1005
9NLH|1|R3|G|1006
*
9NLH|1|R3|U|1023
9NLH|1|R3|G|1024
9NLH|1|R3|U|1025
9NLH|1|R3|G|1026
9NLH|1|R3|C|1027
9NLH|1|R3|C|1028
9NLH|1|R3|U|1029
9NLH|1|R3|U|1030
9NLH|1|R3|C|1031
9NLH|1|R3|G|1032
9NLH|1|R3|G|1033
9NLH|1|R3|G|1034
9NLH|1|R3|A|1035
9NLH|1|R3|A|1036
9NLH|1|R3|C|1037

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14