3D structure

PDB id
9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with Uup-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
9NLJ|1|R1|A|1127, 9NLJ|1|R1|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLJ_038 not in the Motif Atlas
Homologous match to IL_5J7L_281
Geometric discrepancy: 0.0762
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

9NLJ|1|R1|G|1024
9NLJ|1|R1|G|1025
9NLJ|1|R1|G|1026
9NLJ|1|R1|A|1027
9NLJ|1|R1|A|1028
9NLJ|1|R1|A|1029
9NLJ|1|R1|C|1030
*
9NLJ|1|R1|G|1124
9NLJ|1|R1|G|1125
9NLJ|1|R1|A|1126
9NLJ|1|R1|A|1127
9NLJ|1|R1|G|1128
9NLJ|1|R1|A|1129
9NLJ|1|R1|U|1130
9NLJ|1|R1|G|1131
9NLJ|1|R1|U|1132
9NLJ|1|R1|A|1133
9NLJ|1|R1|A|1134
9NLJ|1|R1|C|1135
9NLJ|1|R1|G|1136
9NLJ|1|R1|G|1137
9NLJ|1|R1|G|1138
9NLJ|1|R1|G|1139
9NLJ|1|R1|C|1140

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13
Chain 16
50S ribosomal protein L16
Chain 3
50S ribosomal protein L3
Chain 36
50S ribosomal protein L36
Chain R2
5S ribosomal RNA; 5S rRNA

Coloring options:


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