IL_9NLJ_041

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

9NLJ|1|R1|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|C|1043
9NLJ|1|R1|C|1044
9NLJ|1|R1|C|1045
9NLJ|1|R1|A|1046
9NLJ|1|R1|G|1047
9NLJ|1|R1|A|1048
9NLJ|1|R1|C|1049
9NLJ|1|R1|A|1050
9NLJ|1|R1|G|1051
9NLJ|1|R1|C|1052
9NLJ|1|R1|C|1053
*
9NLJ|1|R1|G|1106
9NLJ|1|R1|G|1107
9NLJ|1|R1|U|1108
9NLJ|1|R1|C|1109
9NLJ|1|R1|G|1110
9NLJ|1|R1|A|1111
9NLJ|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6