IL_9NLJ_067

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9NLJ|1|R1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_067 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0839

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9NLJ|1|R1|C|1686
9NLJ|1|R1|G|1687
9NLJ|1|R1|U|1688
9NLJ|1|R1|A|1689
9NLJ|1|R1|A|1690
9NLJ|1|R1|C|1691
*
9NLJ|1|R1|G|1696
9NLJ|1|R1|G|1697
9NLJ|1|R1|A|1698
9NLJ|1|R1|G|1699
9NLJ|1|R1|A|1700
9NLJ|1|R1|A|1701
9NLJ|1|R1|G|1702

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA