IL_9NLJ_068

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9NLJ|1|R1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_068 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1438

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLJ|1|R1|U|1712
9NLJ|1|R1|A|1713
9NLJ|1|R1|U|1714
9NLJ|1|R1|G|1715
9NLJ|1|R1|U|1716
9NLJ|1|R1|A|1717
9NLJ|1|R1|G|1718
*
9NLJ|1|R1|U|1742
9NLJ|1|R1|G|1743
9NLJ|1|R1|A|1744
9NLJ|1|R1|A|1745
9NLJ|1|R1|A|1746

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain R3

Small subunit ribosomal RNA; SSU rRNA