IL_9NLJ_087

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

9NLJ|1|R1|A|2126, 9NLJ|1|R1|A|2163, 9NLJ|1|R1|C|2164, 9NLJ|1|R1|U|2172, 9NLJ|1|R1|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|G|2123
9NLJ|1|R1|G|2124
9NLJ|1|R1|G|2125
9NLJ|1|R1|A|2126
9NLJ|1|R1|G|2127
*
9NLJ|1|R1|C|2161
9NLJ|1|R1|G|2162
9NLJ|1|R1|A|2163
9NLJ|1|R1|C|2164
9NLJ|1|R1|C|2165
9NLJ|1|R1|U|2166
9NLJ|1|R1|U|2167
9NLJ|1|R1|G|2168
9NLJ|1|R1|A|2169
9NLJ|1|R1|A|2170
9NLJ|1|R1|A|2171
9NLJ|1|R1|U|2172
9NLJ|1|R1|A|2173
9NLJ|1|R1|C|2174
9NLJ|1|R1|C|2175

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain U

Uup