IL_9NLJ_100

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9NLJ|1|R1|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_100 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.5224

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9NLJ|1|R1|C|2591
9NLJ|1|R1|G|2592
*
9NLJ|1|R1|C|2601
9NLJ|1|R1|A|2602
9NLJ|1|R1|G|2603

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 27

Large ribosomal subunit protein bL27

Chain T

Transfer RNA; tRNA

Chain U

Uup