IL_9NLJ_102

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_102 not in the Motif Atlas

Geometric match to IL_8CRE_125

Geometric discrepancy: 0.3238

The information below is about IL_8CRE_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NLJ|1|R1|C|2651
9NLJ|1|R1|C|2652
9NLJ|1|R1|U|2653
9NLJ|1|R1|A|2654
9NLJ|1|R1|G|2655
9NLJ|1|R1|U|2656
9NLJ|1|R1|A|2657
9NLJ|1|R1|C|2658
*
9NLJ|1|R1|G|2663
9NLJ|1|R1|G|2664
9NLJ|1|R1|A|2665
9NLJ|1|R1|C|2666
9NLJ|1|R1|C|2667
9NLJ|1|R1|G|2668
9NLJ|1|R1|G|2669

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 6

Large ribosomal subunit protein uL6