3D structure

PDB id
9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with Uup-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAUAACU*AGCUAAUAC
Length
17 nucleotides
Bulged bases
9NLJ|1|R3|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9NLJ|1|R3|G|147
9NLJ|1|R3|G|148
9NLJ|1|R3|A|149
9NLJ|1|R3|U|150
9NLJ|1|R3|A|151
9NLJ|1|R3|A|152
9NLJ|1|R3|C|153
9NLJ|1|R3|U|154
*
9NLJ|1|R3|A|167
9NLJ|1|R3|G|168
9NLJ|1|R3|C|169
9NLJ|1|R3|U|170
9NLJ|1|R3|A|171
9NLJ|1|R3|A|172
9NLJ|1|R3|U|173
9NLJ|1|R3|A|174
9NLJ|1|R3|C|175

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain st
30S ribosomal protein S20

Coloring options:

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