IL_9NLJ_134

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLJ_134 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1792

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9NLJ|1|R3|U|409
9NLJ|1|R3|G|410
9NLJ|1|R3|A|411
9NLJ|1|R3|A|412
9NLJ|1|R3|G|413
9NLJ|1|R3|A|414
9NLJ|1|R3|A|415
9NLJ|1|R3|G|416
*
9NLJ|1|R3|U|427
9NLJ|1|R3|G|428
9NLJ|1|R3|U|429
9NLJ|1|R3|A|430
9NLJ|1|R3|A|431
9NLJ|1|R3|A|432
9NLJ|1|R3|G|433

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4