IL_9NLQ_005

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_005 not in the Motif Atlas

Homologous match to IL_7A0S_005

Geometric discrepancy: 0.1433

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9NLQ|1|R1|C|183
9NLQ|1|R1|C|184
*
9NLQ|1|R1|G|212
9NLQ|1|R1|A|213
9NLQ|1|R1|G|214

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34