IL_9NLQ_040

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

9NLQ|1|R1|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|C|1043
9NLQ|1|R1|C|1044
9NLQ|1|R1|C|1045
9NLQ|1|R1|A|1046
9NLQ|1|R1|G|1047
9NLQ|1|R1|A|1048
9NLQ|1|R1|C|1049
9NLQ|1|R1|A|1050
9NLQ|1|R1|G|1051
9NLQ|1|R1|C|1052
*
9NLQ|1|R1|G|1107
9NLQ|1|R1|U|1108
9NLQ|1|R1|C|1109
9NLQ|1|R1|G|1110
9NLQ|1|R1|A|1111
9NLQ|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6