IL_9NLQ_045

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_045 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NLQ|1|R1|A|1262
9NLQ|1|R1|U|1263
9NLQ|1|R1|A|1264
9NLQ|1|R1|A|1265
9NLQ|1|R1|G|1266
9NLQ|1|R1|U|1267
9NLQ|1|R1|A|1268
9NLQ|1|R1|A|1269
*
9NLQ|1|R1|U|2011
9NLQ|1|R1|G|2012
9NLQ|1|R1|A|2013
9NLQ|1|R1|A|2014
9NLQ|1|R1|A|2015
9NLQ|1|R1|U|2016
9NLQ|1|R1|U|2017

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32

Chain 4

Large ribosomal subunit protein uL4