IL_9NLQ_051

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9NLQ|1|R1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_051 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.2843

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9NLQ|1|R1|C|1417
9NLQ|1|R1|G|1418
9NLQ|1|R1|A|1419
9NLQ|1|R1|A|1420
9NLQ|1|R1|G|1421
*
9NLQ|1|R1|C|1577
9NLQ|1|R1|U|1578
9NLQ|1|R1|A|1579
9NLQ|1|R1|A|1580
9NLQ|1|R1|G|1581

Current chains

Chain R1

23S ribosomal RNA

Nearby chains