IL_9NLQ_083

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_083 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1386

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9NLQ|1|R1|C|2103
9NLQ|1|R1|C|2104
9NLQ|1|R1|U|2105
*
9NLQ|1|R1|A|2184
9NLQ|1|R1|U|2185
9NLQ|1|R1|G|2186

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1