IL_9NLQ_086

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCUUUGAAGUGU*GCAUGGAGCC

Length

23 nucleotides

Bulged bases

9NLQ|1|R1|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|G|2127
9NLQ|1|R1|G|2128
9NLQ|1|R1|C|2129
9NLQ|1|R1|U|2130
9NLQ|1|R1|U|2131
9NLQ|1|R1|U|2132
9NLQ|1|R1|G|2133
9NLQ|1|R1|A|2134
9NLQ|1|R1|A|2135
9NLQ|1|R1|G|2136
9NLQ|1|R1|U|2137
9NLQ|1|R1|G|2138
9NLQ|1|R1|U|2139
*
9NLQ|1|R1|G|2152
9NLQ|1|R1|C|2153
9NLQ|1|R1|A|2154
9NLQ|1|R1|U|2155
9NLQ|1|R1|G|2156
9NLQ|1|R1|G|2157
9NLQ|1|R1|A|2158
9NLQ|1|R1|G|2159
9NLQ|1|R1|C|2160
9NLQ|1|R1|C|2161

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1