IL_9NLQ_089

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9NLQ|1|R1|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_089 not in the Motif Atlas

Geometric match to IL_9AXU_122

Geometric discrepancy: 0.3919

The information below is about IL_9AXU_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9NLQ|1|R1|U|2401
9NLQ|1|R1|U|2402
9NLQ|1|R1|C|2403
*
9NLQ|1|R1|G|2414
9NLQ|1|R1|G|2415

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 33

Large ribosomal subunit protein bL33

Chain 35

Large ribosomal subunit protein bL35