IL_9NLQ_106

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

9NLQ|1|R1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_106 not in the Motif Atlas

Geometric match to IL_9DFE_017

Geometric discrepancy: 0.2641

The information below is about IL_9DFE_017

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9NLQ|1|R1|C|2795
9NLQ|1|R1|U|2796
*
9NLQ|1|R1|A|2799
9NLQ|1|R1|A|2800
9NLQ|1|R1|G|2801

Current chains

Chain R1

23S ribosomal RNA

Nearby chains