IL_9NLQ_116

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

9NLQ|1|R3|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_116 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.1056

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

9NLQ|1|R3|U|30
9NLQ|1|R3|G|31
9NLQ|1|R3|A|32
*
9NLQ|1|R3|U|552
9NLQ|1|R3|A|553

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12