IL_9NLQ_122

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

9NLQ|1|R3|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_122 not in the Motif Atlas

Geometric match to IL_8OI5_136

Geometric discrepancy: 0.3239

The information below is about IL_8OI5_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9NLQ|1|R3|U|70
9NLQ|1|R3|A|71
9NLQ|1|R3|A|72
9NLQ|1|R3|C|73
*
9NLQ|1|R3|G|97
9NLQ|1|R3|A|98

Current chains

Chain R3

16S ribosomal RNA

Nearby chains